ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1b8yA1 - ECOD Domain | ECOD

ECOD/Domains/e1b8yA1

e1b8yA1

UID: 000118374

PDB

Range: A:89-247
PDB: 1B8Y chain A(all domains)
UniProt: P08254 (all domains)
Gene: MMP3

Molecule: PROTEIN (STROMELYSIN-1)

3D Structure

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Related Domains

Browse other domains in Peptidase_M10 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M10(2498.1.1.1)

Ligands

in contact, ≤ 4 Å

[4-(4-PHENYL-PIPERIDIN-1-YL)-BENZENESULFONYLAMINO]-ACETIC ACIDIN7
drugDrugBank DB07986
Calcium ionCA
metal
Zinc ion

Pfam Families

PF00413Peptidase_M10

Matrixin

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 1B8Y RCSB PDB: 1B8Y PDBe: 1B8Y UniProt: P08254

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.