ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1jj9A1 - ECOD Domain | ECOD

ECOD/Domains/e1jj9A1

e1jj9A1

UID: 000118426

PDB

Range: A:85-242
PDB: 1JJ9 chain A(all domains)
UniProt: P22894 (all domains)
Gene: MMP8

Molecule: Matrix Metalloproteinase 8

3D Structure

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Related Domains

Browse other domains in Peptidase_M10 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M10(2498.1.1.1)

Ligands

in contact, ≤ 4 Å

5-[4-(2-Hydroxyethyl)-1-piperidinyl]-5-phenyl-2,4,6(1H,3H,5H)-pyrimidinetrioneBBT
drugDrugBank DB03622
Calcium ionCA
metal

Pfam Families

PF00413Peptidase_M10

Matrixin

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 1JJ9 RCSB PDB: 1JJ9 PDBe: 1JJ9 UniProt: P22894

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Zinc ion

metal

Shown in the structure viewer. Drug annotations from DrugDomain.