ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1japA1 - ECOD Domain | ECOD

ECOD/Domains/e1japA1

e1japA1

UID: 000118511

PDB

Range: A:86-242
PDB: 1JAP chain A(all domains)
UniProt: P22894 (all domains)
Gene: MMP8

Molecule: MATRIX METALLO PROTEINASE-8 (MET80 FORM)

3D Structure

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Related Domains

Browse other domains in Peptidase_M10 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M10(2498.1.1.1)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00413Peptidase_M10

Matrixin

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 1JAP RCSB PDB: 1JAP PDBe: 1JAP UniProt: P22894

Downloads

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