ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1hv5E1 - ECOD Domain | ECOD

ECOD/Domains/e1hv5E1

e1hv5E1

UID: 000118514

PDB

Range: E:106-262
PDB: 1HV5 chain E(all domains)
UniProt: Q02853 (all domains)
Gene: Mmp11

Molecule: STROMELYSIN 3

3D Structure

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Related Domains

Browse other domains in Peptidase_M10 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M10(2498.1.1.1)

Ligands

in contact, ≤ 4 Å

Nα-[(2S)-2-{[(S)-[(1S)-1-{[(Benzyloxy)carbonyl]amino}-2-phenylethyl](hydroxy)phosphoryl]methyl}-5-phenylpentanoyl]-L-tryptophanamideRXP
drugDrugBank DB04318
Calcium ionCA
metal

Pfam Families

PF00413Peptidase_M10

Matrixin

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 1HV5 RCSB PDB: 1HV5 PDBe: 1HV5 UniProt: Q02853

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATECPS

Zinc ionZN

metal

Shown in the structure viewer. Drug annotations from DrugDomain.