ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1xm5B1 - ECOD Domain | ECOD

ECOD/Domains/e1xm5B1

e1xm5B1

UID: 000118572

PDB

Range: B:2001-2152
PDB: 1XM5 chain B(all domains)
UniProt: P0A898 (all domains)
Gene: ybeY

Molecule: Hypothetical UPF0054 protein ybeY

3D Structure

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Related Domains

Browse other domains in YbeY →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyYbeY(2498.1.1.22)

Ligands

in contact, ≤ 4 Å

NICKEL (II) IONNI
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Endoribonuclease YbeY

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 1XM5 RCSB PDB: 1XM5 PDBe: 1XM5 UniProt: P0A898

Downloads

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