ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ko0A5 - ECOD Domain | ECOD

ECOD/Domains/e4ko0A5

e4ko0A5

UID: 001186486

PDB

Range: A:317-428
PDB: 4KO0 chain A(all domains)
UniProt: P03366 (all domains)
Gene: gag-pol

Molecule: HIV-1 reverse transcriptase, p66 subunit

3D Structure

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Related Domains

Browse other domains in RVT_connect →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRNaseH-like domain in reverse transcriptase(2484.5)

TT-groupRNaseH-like domain in reverse transcriptase(2484.5.1)

FFamilyRVT_connect(2484.5.1.1)

Ligands

in contact, ≤ 4 Å

4-[(4-methoxypyrimidin-2-yl)amino]-2-[(3-methylbut-2-en-1-yl)oxy]benzonitrileJLJ

+ 2 additives (1,2-ETHANEDIOL, Sulfate ion)

1,2-ETHANEDIOLEDO
Sulfate ionSO4

Shown in the structure viewer.

Pfam Families

PF06815RVT_connect

Reverse transcriptase connection domain

External Links

ECOD PDB View: 4KO0 RCSB PDB: 4KO0 PDBe: 4KO0 UniProt: P03366

Downloads

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Drug annotations from DrugDomain.