ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2rkiA12 - ECOD Domain | ECOD

ECOD/Domains/e2rkiA12

e2rkiA12

UID: 001186771

PDB

Range: A:1-239
PDB: 2RKI chain A(all domains)
UniProt: P04585 (all domains)
Gene: gag-pol

Molecule: HIV-1 reverse transcriptase (RT) p66

3D Structure

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Related Domains

Browse other domains in RVT_1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyRVT_1(304.48.1.1)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
4-benzyl-3-[(2-chlorobenzyl)sulfanyl]-5-thiophen-2-yl-4H-1,2,4-triazoleTT1

+ 1 additive (Sulfate ion)

Sulfate ionSO4

Pfam Families

Reverse transcriptase (RNA-dependent DNA polymerase)

ClanCL0027RdRP

External Links

ECOD PDB View: 2RKI RCSB PDB: 2RKI PDBe: 2RKI UniProt: P04585

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.