ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4e1mA2 - ECOD Domain | ECOD

ECOD/Domains/e4e1mA2

e4e1mA2

UID: 001187511

PDB

Range: A:56-207
PDB: 4E1M chain A(all domains)
UniProt: P12497 (all domains)
Gene: gag-pol

Molecule: HIV-1 Integrase

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

(2S)-tert-butoxy[4-(3,4-dimethylphenyl)-2-methylquinolin-3-yl]ethanoic acidTQ2

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 4E1M RCSB PDB: 4E1M PDBe: 4E1M UniProt: P12497

Downloads

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