ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2yi1A6 - ECOD Domain | ECOD

ECOD/Domains/e2yi1A6

e2yi1A6

UID: 001187933

PDB

Range: A:529-717
PDB: 2YI1 chain A(all domains)
UniProt: Q9Y223 (all domains)
Gene: GNE

Molecule: BIFUNCTIONAL UDP-N-ACETYLGLUCOSAMINE 2-EPIMERASE/N-ACETYLMANNOSAMINE KINASE

3D Structure

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Related Domains

Browse other domains in ROK →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyROK(2484.1.1.8)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
2-acetamido-2-deoxy-alpha-D-mannopyranoseBM3
2-acetamido-2-deoxy-6-O-phosphono-alpha-D-mannopyranoseBMX

Pfam Families

ROK family

ClanCL0108Actin_ATPase

External Links

ECOD PDB View: 2YI1 RCSB PDB: 2YI1 PDBe: 2YI1 UniProt: Q9Y223

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Calcium ionCA

metal

Zinc ionZN

metal

Magnesium ionMG

metalwithin 5 Å only

+ 2 additives (Acetate, 1,2-ETHANEDIOL)

AcetateACT
DrugBank DB14511
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.