ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2ydsA8 - ECOD Domain | ECOD

ECOD/Domains/e2ydsA8

e2ydsA8

UID: 001190771

PDB

Range: A:179-494
PDB: 2YDS chain A(all domains)
UniProt: Q0TR53 (all domains)
Gene: nagJ

Molecule: O-GLCNACASE NAGJ

3D Structure

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Related Domains

Browse other domains in NAGidase →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyNAGidase(2002.1.1.150)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
Cadmium ionCD
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF07555NAGidase

beta-N-acetylglucosaminidase

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 2YDS RCSB PDB: 2YDS PDBe: 2YDS UniProt: Q0TR53

Downloads

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