ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3b1dD3 - ECOD Domain | ECOD

ECOD/Domains/e3b1dD3

e3b1dD3

UID: 001193905

PDB

Range: D:285-388
PDB: 3B1D chain D(all domains)
UniProt: A6BMJ3 (all domains)
Gene: lcd

Molecule: BetaC-S lyase

3D Structure

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Related Domains

Browse other domains in Aminotran_1_2 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupC-terminal domain in some PLP-dependent transferases(3016)

HH-groupC-terminal domain in some PLP-dependent transferases(3016.1)

TT-groupC-terminal domain in some PLP-dependent transferases(3016.1.1)

FFamilyAminotran_1_2(3016.1.1.1)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal
[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-SERINEPLS

+ 1 additive (4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID)

4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACIDEPE

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00155Aminotran_1_2

Aminotransferase class I and II

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 3B1D RCSB PDB: 3B1D PDBe: 3B1D UniProt: A6BMJ3

Downloads

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