ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3ei5B3 - ECOD Domain | ECOD

ECOD/Domains/e3ei5B3

e3ei5B3

UID: 001193939

PDB

Range: B:19-57,B:328-426
PDB: 3EI5 chain B(all domains)
UniProt: Q93ZN9 (all domains)
Gene: DAP

Molecule: LL-diaminopimelate aminotransferase

3D Structure

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Related Domains

Browse other domains in Aminotran_1_2 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupC-terminal domain in some PLP-dependent transferases(3016)

HH-groupC-terminal domain in some PLP-dependent transferases(3016.1)

TT-groupC-terminal domain in some PLP-dependent transferases(3016.1.1)

FFamilyAminotran_1_2(3016.1.1.1)

Ligands

in contact, ≤ 4 Å

N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-glutamic acidPGU

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00155Aminotran_1_2

Aminotransferase class I and II

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 3EI5 RCSB PDB: 3EI5 PDBe: 3EI5 UniProt: Q93ZN9

Downloads

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