ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1rv3B2 - ECOD Domain | ECOD

ECOD/Domains/e1rv3B2

e1rv3B2

UID: 001194068

PDB

Range: B:322-484
PDB: 1RV3 chain B(all domains)
UniProt: P07511 (all domains)
Gene: SHMT1

Molecule: Serine hydroxymethyltransferase, cytosolic

3D Structure

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Related Domains

Browse other domains in SHMT →

Classification

AArchitecturea+b two layers(a.11)

XX-groupC-terminal domain in some PLP-dependent transferases(3016)

HH-groupC-terminal domain in some PLP-dependent transferases(3016.1)

TT-groupC-terminal domain in some PLP-dependent transferases(3016.1.1)

FFamilySHMT(3016.1.1.5)

Ligands

in contact, ≤ 4 Å

GlycineGLY
drugDrugBank DB00145

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer.

Pfam Families

Serine hydroxymethyltransferase

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 1RV3 RCSB PDB: 1RV3 PDBe: 1RV3 UniProt: P07511

Downloads

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Drug annotations from DrugDomain.