ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3eqlN40 - ECOD Domain | ECOD

ECOD/Domains/e3eqlN40

e3eqlN40

UID: 001195744

PDB

Range: N:949-1109
PDB: 3EQL chain N(all domains)
UniProt: Q8RQE8 (all domains)
Gene: rpoC

Molecule: DNA-directed RNA polymerase subunit beta'

3D Structure

Loading viewer...

Related Domains

Browse other domains in RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupsecond helical domain in RNA-polymerase beta-prime subunit(4958)

HH-groupsecond helical domain in RNA-polymerase beta-prime subunit(4958.1)

TT-groupsecond helical domain in RNA-polymerase beta-prime subunit(4958.1.1)

FFamilyRNA_pol_Rpb1_5,RNA_pol_Rpb1_4(4958.1.1.1)

Ligands

in contact, ≤ 4 Å

Myxopyronin BMXP
drugDrugBank DB08226

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF04998RNA_pol_Rpb1_5

RNA polymerase Rpb1, domain 5

PF05000RNA_pol_Rpb1_4

RNA polymerase Rpb1, domain 4

External Links

ECOD PDB View: 3EQL RCSB PDB: 3EQL PDBe: 3EQL UniProt: Q8RQE8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure