ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3qq7A6 - ECOD Domain | ECOD

ECOD/Domains/e3qq7A6

e3qq7A6

UID: 001195907

PDB

Range: A:108-187
PDB: 3QQ7 chain A(all domains)
UniProt: P55072 (all domains)
Gene: VCP

Molecule: Transitional endoplasmic reticulum ATPase

3D Structure

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Related Domains

Browse other domains in CDC48_2 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupCdc48 domain 2-like(229)

HH-groupCdc48 domain 2-like(229.1)

TT-groupCdc48 domain 2-like(229.1.1)

FFamilyCDC48_2(229.1.1.1)

Ligands

in contact, ≤ 4 Å

Hexane-1,6-DiolHEZ
drugDrugBank DB02210
Chloride ionCL
COBALT (II) IONCO

Pfam Families

PF02933CDC48_2

Cell division protein 48 (CDC48), domain 2

ClanCL0402Cdc48_2-like

External Links

ECOD PDB View: 3QQ7 RCSB PDB: 3QQ7 PDBe: 3QQ7 UniProt: P55072

Downloads

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metal

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.