ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ferB3 - ECOD Domain | ECOD

ECOD/Domains/e4ferB3

e4ferB3

UID: 001196180

PDB

Range: B:2-112
PDB: 4FER chain B(all domains)
UniProt: O34918 (all domains)
Gene: yoaJ

Molecule: Expansin-yoaJ

3D Structure

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Related Domains

Browse other domains in DPBB_1 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupdouble psi(1.1.2)

FFamilyDPBB_1(1.1.2.9)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Acetic acid, Glycerin, Sulfate ion)

Acetic acidACY
DrugBank DB03166
GlycerinGOL
DrugBank DB09462
Sulfate ion

Pfam Families

Lytic transglycolase

ClanCL0199DPBB

External Links

ECOD PDB View: 4FER RCSB PDB: 4FER PDBe: 4FER UniProt: O34918

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.