ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1vs0B5 - ECOD Domain | ECOD

ECOD/Domains/e1vs0B5

e1vs0B5

UID: 001199512

PDB

Range: B:453-641
PDB: 1VS0 chain B(all domains)
UniProt: P9WNV3 (all domains)
Gene: ligD

Molecule: Putative DNA ligase-like protein Rv0938/MT0965

3D Structure

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Related Domains

Browse other domains in DNA_ligase_A_M →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupATP-grasp(206.1.3)

FFamilyDNA_ligase_A_M(206.1.3.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01068DNA_ligase_A_M

ATP dependent DNA ligase domain

ClanCL0179ATP-grasp

External Links

ECOD PDB View: 1VS0 RCSB PDB: 1VS0 PDBe: 1VS0 UniProt: P9WNV3

Downloads

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