ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4dpwH6 - ECOD Domain | ECOD

ECOD/Domains/e4dpwH6

e4dpwH6

UID: 001202489

PDB

Range: H:169-326
PDB: 4DPW chain H(all domains)
UniProt: Q9FD73 (all domains)
Gene: mvaD

Molecule: Mevalonate diphosphate decarboxylase

3D Structure

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Related Domains

Browse other domains in MDD_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupGHMP Kinase, C-terminal domain(304.1)

TT-groupGHMP Kinase, C-terminal domain(304.1.1)

FFamilyMDD_C(304.1.1.3)

Ligands

in contact, ≤ 4 Å

Adenosine 5'-[gamma-thio]triphosphateAGS
drugDrugBank DB02930
(3R)-3-HYDROXY-5-{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}-3-METHYLPENTANOIC ACIDDP6

+ 1 additive (Formic acid)

Pfam Families

Mevalonate 5-diphosphate decarboxylase C-terminal domain

ClanCL0677GHMP_C

External Links

ECOD PDB View: 4DPW RCSB PDB: 4DPW PDBe: 4DPW UniProt: Q9FD73

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Formic acidFMT

DrugBank DB01942

Shown in the structure viewer. Drug annotations from DrugDomain.