ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4dptB5 - ECOD Domain | ECOD

ECOD/Domains/e4dptB5

e4dptB5

UID: 001202500

PDB

Range: B:2-168
PDB: 4DPT chain B(all domains)
UniProt: Q9FD73 (all domains)
Gene: mvaD

Molecule: Mevalonate diphosphate decarboxylase

3D Structure

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Related Domains

Browse other domains in MVD-like_N →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibosomal protein S5 domain 2-like(212)

HH-groupRibosomal protein S5 domain 2-like(212.1)

TT-groupRibosomal protein S5 domain 2-like(212.1.1)

FFamilyMVD-like_N(212.1.1.25)

Ligands

in contact, ≤ 4 Å

Adenosine 5'-[gamma-thio]triphosphateAGS
drugDrugBank DB02930
(3R)-3-(fluoromethyl)-3-hydroxy-5-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}pentanoic acidFM0

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF22700MVD-like_N

Diphosphomevalonate decarboxylase-like N-terminal domain

ClanCL0329S5

External Links

ECOD PDB View: 4DPT RCSB PDB: 4DPT PDBe: 4DPT UniProt: Q9FD73

Downloads

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