ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4du7B5 - ECOD Domain | ECOD

ECOD/Domains/e4du7B5

e4du7B5

UID: 001202504

PDB

Range: B:1-168
PDB: 4DU7 chain B(all domains)
UniProt: Q9FD73 (all domains)
Gene: mvaD

Molecule: Mevalonate diphosphate decarboxylase

3D Structure

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Related Domains

Browse other domains in MVD-like_N →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibosomal protein S5 domain 2-like(212)

HH-groupRibosomal protein S5 domain 2-like(212.1)

TT-groupRibosomal protein S5 domain 2-like(212.1.1)

FFamilyMVD-like_N(212.1.1.25)

Ligands

in contact, ≤ 4 Å

(3R)-3-HYDROXY-5-{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}-3-METHYLPENTANOIC ACIDDP6

+ 1 additive (Formic acid)

Formic acidFMT
DrugBank DB01942

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF22700MVD-like_N

Diphosphomevalonate decarboxylase-like N-terminal domain

ClanCL0329S5

External Links

ECOD PDB View: 4DU7 RCSB PDB: 4DU7 PDBe: 4DU7 UniProt: Q9FD73

Downloads

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