ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4fvaB2 - ECOD Domain | ECOD

ECOD/Domains/e4fvaB2

e4fvaB2

UID: 001203293

PDB

Range: B:113-362
PDB: 4FVA chain B(all domains)
UniProt: Q9XWG3 (all domains)
Gene: tdpt-1

Molecule: 5'-tyrosyl-DNA phosphodiesterase

3D Structure

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Related Domains

Browse other domains in Exo_endo_phos →

Classification

AArchitecturea+b four layers(a.13)

XX-groupCarbon-nitrogen hydrolase-like(246)

HH-groupDNase I-like(246.3)

TT-groupDNase I-like(246.3.1)

FFamilyExo_endo_phos(246.3.1.1)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 2 additives (Malonate Ion, 1,2-ETHANEDIOL)

Malonate IonMLI
DrugBank DB02201
1,2-ETHANEDIOL

Pfam Families

PF03372Exo_endo_phos

Endonuclease/Exonuclease/phosphatase family

ClanCL0530DNase_I-like

External Links

ECOD PDB View: 4FVA RCSB PDB: 4FVA PDBe: 4FVA UniProt: Q9XWG3

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.