ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2d1rA6 - ECOD Domain | ECOD

ECOD/Domains/e2d1rA6

e2d1rA6

UID: 001203708

PDB

Range: A:430-545
PDB: 2D1R chain A(all domains)
UniProt: P13129 (all domains)

Molecule: Luciferin 4-monooxygenase

3D Structure

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Related Domains

Browse other domains in AMP-binding_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-lytic protease prodomain-like(327)

HH-groupa+b domain in acetyl-CoA synthetase-like proteins(327.5)

TT-groupa+b domain in acetyl-CoA synthetase-like proteins(327.5.1)

FFamilyAMP-binding_C(327.5.1.2)

Ligands

in contact, ≤ 4 Å

Adenosine phosphateAMP
drugDrugBank DB00131
2-(6-HYDROXY-1,3-BENZOTHIAZOL-2-YL)-1,3-THIAZOL-4(5H)-ONEOLU
drugDrugBank DB08326within 5 Å only

Pfam Families

PF13193AMP-binding_C

AMP-binding enzyme C-terminal domain

ClanCL0531AMP-binding_C

External Links

ECOD PDB View: 2D1R RCSB PDB: 2D1R PDBe: 2D1R UniProt: P13129

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.