ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3bm3B2 - ECOD Domain | ECOD

ECOD/Domains/e3bm3B2

e3bm3B2

UID: 001204358

PDB

Range: B:3-31,B:51-260
PDB: 3BM3 chain B(all domains)
UniProt: O93646 (all domains)

Molecule: PspGI restriction endonuclease

3D Structure

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Related Domains

Browse other domains in EcoRII-C →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRestriction endonuclease-like(2008)

HH-groupRestriction endonuclease-like(2008.1)

TT-groupRestriction endonuclease-like(2008.1.1)

FFamilyEcoRII-C(2008.1.1.36)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Citric acid)

Citric acidCIT
DrugBank DB04272

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF09019EcoRII-C

EcoRII C terminal

ClanCL0236PDDEXK

External Links

ECOD PDB View: 3BM3 RCSB PDB: 3BM3 PDBe: 3BM3 UniProt: O93646

Downloads

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