ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3vmaA9 - ECOD Domain | ECOD

ECOD/Domains/e3vmaA9

e3vmaA9

UID: 001205106

PDB

Range: A:72-109,A:199-406
PDB: 3VMA chain A(all domains)
UniProt: P02919 (all domains)
Gene: mrcB

Molecule: Penicillin-binding protein 1B

3D Structure

Loading viewer...

Related Domains

Browse other domains in Transgly →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupLysozyme-like(235)

HH-groupLysozyme-like(235.1)

TT-groupLysozyme-like(235.1.1)

FFamilyTransgly(235.1.1.5)

Ligands

in contact, ≤ 4 Å

MoenomycinM0E

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00912Transgly

Transglycosylase

ClanCL0037Lysozyme

External Links

ECOD PDB View: 3VMA RCSB PDB: 3VMA PDBe: 3VMA UniProt: P02919

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure