ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2po2B3 - ECOD Domain | ECOD

ECOD/Domains/e2po2B3

e2po2B3

UID: 001208105

PDB

Range: B:8-188
PDB: 2PO2 chain B(all domains)
UniProt: Q9V118 (all domains)
Gene: rrp42

Molecule: Probable exosome complex exonuclease 2

3D Structure

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Related Domains

Browse other domains in RNase_PH →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibosomal protein S5 domain 2-like(212)

HH-groupRibosomal protein S5 domain 2-like(212.1)

TT-groupRibosomal protein S5 domain 2-like(212.1.1)

FFamilyRNase_PH(212.1.1.10)

Ligands

in contact, ≤ 4 Å

Cytidine-5'-DiphosphateCDP
drugDrugBank DB04555within 5 Å only

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

(4r)-2-Methylpentane-2,4-DiolMPD

Pfam Families

PF01138RNase_PH

3' exoribonuclease family, domain 1

ClanCL0329S5

External Links

ECOD PDB View: 2PO2 RCSB PDB: 2PO2 PDBe: 2PO2 UniProt: Q9V118

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.