ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2po2B4 - ECOD Domain | ECOD

ECOD/Domains/e2po2B4

e2po2B4

UID: 001208106

PDB

Range: B:188-274
PDB: 2PO2 chain B(all domains)
UniProt: Q9V118 (all domains)
Gene: rrp42

Molecule: Probable exosome complex exonuclease 2

3D Structure

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Related Domains

Browse other domains in RNase_PH_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibonuclease PH domain 2-like(245)

HH-groupRibonuclease PH domain 2(245.1)

TT-groupRibonuclease PH domain 2(245.1.1)

FFamilyRNase_PH_C(245.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF03725RNase_PH_C

3' exoribonuclease family, domain 2

External Links

ECOD PDB View: 2PO2 RCSB PDB: 2PO2 PDBe: 2PO2 UniProt: Q9V118

Downloads

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