ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4kgnC2 - ECOD Domain | ECOD

ECOD/Domains/e4kgnC2

e4kgnC2

UID: 001208237

PDB

Range: C:0-156
PDB: 4KGN chain C(all domains)
UniProt: Q3JWH1 (all domains)
Gene: trmL

Molecule: tRNA (cytidine(34)-2'-O)-methyltransferase

3D Structure

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Related Domains

Browse other domains in SpoU_methylase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilySpoU_methylase(2488.1.1.1)

Ligands

in contact, ≤ 4 Å

S-adenosyl-L-homocysteineSAH
drugDrugBank DB01752
Chloride ionCL

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00588SpoU_methylase

SpoU rRNA Methylase family

ClanCL0098SPOUT

External Links

ECOD PDB View: 4KGN RCSB PDB: 4KGN PDBe: 4KGN UniProt: Q3JWH1

Downloads

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