ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e4kgnB2 - ECOD Domain | ECOD

ECOD/Domains/e4kgnB2

e4kgnB2

UID: 001208240

PDB

Range: B:1-156
PDB: 4KGN chain B(all domains)
UniProt: Q3JWH1 (all domains)
Gene: trmL

Molecule: tRNA (cytidine(34)-2'-O)-methyltransferase

3D Structure

Loading viewer...

Related Domains

Browse other domains in SpoU_methylase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilySpoU_methylase(2488.1.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00588SpoU_methylase

SpoU rRNA Methylase family

ClanCL0098SPOUT

External Links

ECOD PDB View: 4KGN RCSB PDB: 4KGN PDBe: 4KGN UniProt: Q3JWH1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure