ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1hkvA1 - ECOD Domain | ECOD

ECOD/Domains/e1hkvA1

e1hkvA1

UID: 000000121

RepresentativePDB

Range: A:2-45,A:311-447
PDB: 1HKV chain A(all domains)
UniProt: P9WIU7 (all domains)
Gene: lysA

Molecule: DIAMINOPIMELATE DECARBOXYLASE

3D Structure

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Related Domains

Browse other domains in Orn_DAP_Arg_deC →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupAlanine racemase-C(1.1.7)

FFamilyOrn_DAP_Arg_deC(1.1.7.1)

Ligands

in contact, ≤ 4 Å

LysineLYS
drugDrugBank DB00123
Pyridoxal phosphatePLP
drugDrugBank DB00114

Shown in the structure viewer. Drug annotations from .

Pfam Families

PF00278Orn_DAP_Arg_deC

Pyridoxal-dependent decarboxylase, C-terminal sheet domain

ClanCL0866ALR_C-like

External Links

ECOD PDB View: 1HKV RCSB PDB: 1HKV PDBe: 1HKV UniProt: P9WIU7

Downloads

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