ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3vqiD12 - ECOD Domain | ECOD

ECOD/Domains/e3vqiD12

e3vqiD12

UID: 001210420

PDB

Range: D:191-271
PDB: 3VQI chain D(all domains)
UniProt: J3QW33 (all domains)

Molecule: Atg5

3D Structure

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Related Domains

Browse other domains in ATG5_UblB →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupUbiquitin-related(221.1)

TT-groupUbiquitin-like(221.1.1)

FFamilyATG5_UblB(221.1.1.24)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (HEPES, Sulfate ion)

HEPESEPE
DrugBank DB16872
Sulfate ionSO4
DrugBank DB14546within 5 Å only

Shown in the structure viewer.

Pfam Families

PF04106ATG5_UblB

Autophagy protein ATG5, UblB domain

ClanCL0072Ubiquitin

External Links

ECOD PDB View: 3VQI RCSB PDB: 3VQI PDBe: 3VQI UniProt: J3QW33

Downloads

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Drug annotations from DrugDomain.