ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3vepE2 - ECOD Domain | ECOD

ECOD/Domains/e3vepE2

e3vepE2

UID: 001212081

PDB

Range: E:141-210
PDB: 3VEP chain E(all domains)
UniProt: P9WGG9 (all domains)
Gene: sigD

Molecule: Probable RNA polymerase sigma-D factor

3D Structure

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Related Domains

Browse other domains in Sigma70_r4_2 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupThree-helical HTH(101.1.1)

FFamilySigma70_r4_2(101.1.1.42)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF08281Sigma70_r4_2

Sigma-70, region 4

ClanCL0123HTH

External Links

ECOD PDB View: 3VEP RCSB PDB: 3VEP PDBe: 3VEP UniProt: P9WGG9

Downloads

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