ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3vabB5 - ECOD Domain | ECOD

ECOD/Domains/e3vabB5

e3vabB5

UID: 001212736

PDB

Range: B:34-285
PDB: 3VAB chain B(all domains)
UniProt: Q8YJJ9 (all domains)
Gene: lysA

Molecule: Diaminopimelate decarboxylase 1

3D Structure

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Related Domains

Browse other domains in Orn_Arg_deC_N →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyOrn_Arg_deC_N(2002.1.1.101)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02784Orn_Arg_deC_N

Pyridoxal-dependent decarboxylase, pyridoxal binding domain

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 3VAB RCSB PDB: 3VAB PDBe: 3VAB UniProt: Q8YJJ9

Downloads

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