ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4fk5A7 - ECOD Domain | ECOD

ECOD/Domains/e4fk5A7

e4fk5A7

UID: 001218168

PDB

Range: A:134-471
PDB: 4FK5 chain A(all domains)
UniProt: P50102 (all domains)
Gene: UBP8

Molecule: Ubiquitin carboxyl-terminal hydrolase 8

3D Structure

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Related Domains

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Classification

AArchitecturea+b complex topology(a.14)

XX-groupCysteine proteinases-like(219)

HH-groupCysteine proteinases(219.1)

TT-groupCysteine proteinases(219.1.1)

FFamilyUCH(219.1.1.3)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Ubiquitin carboxyl-terminal hydrolase

ClanCL0125Peptidase_CA

External Links

ECOD PDB View: 4FK5 RCSB PDB: 4FK5 PDBe: 4FK5 UniProt: P50102

Downloads

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