ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3vgdA6 - ECOD Domain | ECOD

ECOD/Domains/e3vgdA6

e3vgdA6

UID: 001220995

PDB

Range: A:89-490
PDB: 3VGD chain A(all domains)
UniProt: Q55088 (all domains)
Gene: treZ

Molecule: Malto-oligosyltrehalose trehalohydrolase

3D Structure

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Related Domains

Browse other domains in Alpha-amylase →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyAlpha-amylase(2002.1.1.4)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Citrate anion)

GlycerinGOL
DrugBank DB09462
Citrate anionFLC

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00128Alpha-amylase

Alpha amylase, catalytic domain

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 3VGD RCSB PDB: 3VGD PDBe: 3VGD UniProt: Q55088

Downloads

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