ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3qqcA3 - ECOD Domain | ECOD

ECOD/Domains/e3qqcA3

e3qqcA3

UID: 001223288

RepresentativePDB

Range: A:2-64,A:67-371,A:407-436
PDB: 3QQC chain A(all domains)
UniProt: Q8U0M4 (all domains)
Gene: rpo1N

Molecule: DNA-directed RNA polymerase subunit b, DNA-directed RNA polymerase subunit a', DNA-directed RNA polymerase subunit A''

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb1_1 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupN-terminal domain in RNA-polymerase beta-prime subunit(4246)

HH-groupN-terminal domain in RNA-polymerase beta-prime subunit(4246.1)

TT-groupN-terminal domain in RNA-polymerase beta-prime subunit(4246.1.1)

FFamilyRNA_pol_Rpb1_1(4246.1.1.2)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF04997RNA_pol_Rpb1_1

RNA polymerase Rpb1, domain 1

External Links

ECOD PDB View: 3QQC RCSB PDB: 3QQC PDBe: 3QQC UniProt: Q8U0M4

Downloads

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