ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3fefB3 - ECOD Domain | ECOD

ECOD/Domains/e3fefB3

e3fefB3

UID: 001230749

PDB

Range: B:7-173
PDB: 3FEF chain B(all domains)
UniProt: P39130 (all domains)
Gene: lplD

Molecule: Putative glucosidase lplD, ALPHA-GALACTURONIDASE

3D Structure

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Related Domains

Browse other domains in Glyco_hydro_4 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamilyGlyco_hydro_4(2003.1.1.26)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02056Glyco_hydro_4

Family 4 glycosyl hydrolase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 3FEF RCSB PDB: 3FEF PDBe: 3FEF UniProt: P39130

Downloads

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