ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3fefC4 - ECOD Domain | ECOD

ECOD/Domains/e3fefC4

e3fefC4

UID: 001230752

PDB

Range: C:173-440
PDB: 3FEF chain C(all domains)
UniProt: P39130 (all domains)
Gene: lplD

Molecule: Putative glucosidase lplD, ALPHA-GALACTURONIDASE

3D Structure

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Related Domains

Browse other domains in Glyco_hydro_4C →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupLDH C-terminal domain-like(279)

HH-groupLDH C-terminal domain-like(279.1)

TT-groupLDH C-terminal domain-like(279.1.1)

FFamilyGlyco_hydro_4C(279.1.1.2)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF11975Glyco_hydro_4C

Family 4 glycosyl hydrolase C-terminal domain

ClanCL0341LDH_C

External Links

ECOD PDB View: 3FEF RCSB PDB: 3FEF PDBe: 3FEF UniProt: P39130

Downloads

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