ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3sysB2 - ECOD Domain | ECOD

ECOD/Domains/e3sysB2

e3sysB2

UID: 001236735

PDB

Range: B:4-390
PDB: 3SYS chain B(all domains)
UniProt: Q9HUR5 (all domains)
Gene: opdK

Molecule: Vanillate porin OpdK

3D Structure

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Related Domains

Browse other domains in OprD →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOuter membrane meander beta-barrels(5084)

HH-groupPorins(5084.5)

TT-groupPorin(5084.5.1)

FFamilyOprD(5084.5.1.4)

Ligands

in contact, ≤ 4 Å

Vanillic acidVNL
drugDrugBank DB02130

+ 2 additives ((Hydroxyethyloxy)Tri(Ethyloxy)Octane, 1,2-ETHANEDIOL)

(Hydroxyethyloxy)Tri(Ethyloxy)OctaneC8E
DrugBank DB04233

Pfam Families

outer membrane porin, OprD family

ClanCL0193MBB

External Links

ECOD PDB View: 3SYS RCSB PDB: 3SYS PDBe: 3SYS UniProt: Q9HUR5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.