ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4fmsB2 - ECOD Domain | ECOD

ECOD/Domains/e4fmsB2

e4fmsB2

UID: 001236740

PDB

Range: B:7-72,B:92-397
PDB: 4FMS chain B(all domains)
UniProt: Q9I6P8 (all domains)
Gene: PA0240

Molecule: Probable porin

3D Structure

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Related Domains

Browse other domains in OprD →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOuter membrane meander beta-barrels(5084)

HH-groupPorins(5084.5)

TT-groupPorin(5084.5.1)

FFamilyOprD(5084.5.1.4)

Ligands

in contact, ≤ 4 Å

beta-D-glucuronic acidBDP
drugDrugBank DB03156
(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATEPGV

+ 2 additives ((Hydroxyethyloxy)Tri(Ethyloxy)Octane, Sulfate ion)

Pfam Families

outer membrane porin, OprD family

ClanCL0193MBB

External Links

ECOD PDB View: 4FMS RCSB PDB: 4FMS PDBe: 4FMS UniProt: Q9I6P8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(Hydroxyethyloxy)Tri(Ethyloxy)OctaneC8E

DrugBank DB04233

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.