ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ar8A2 - ECOD Domain | ECOD

ECOD/Domains/e4ar8A2

e4ar8A2

UID: 001237907

PDB

Range: A:340-616
PDB: 4AR8 chain A(all domains)
UniProt: Q899Y1 (all domains)
Gene: colT

Molecule: COLLAGENASE COLT

3D Structure

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Related Domains

Browse other domains in Peptidase_M9 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M9(2498.1.1.16)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01752Peptidase_M9

Collagenase

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 4AR8 RCSB PDB: 4AR8 PDBe: 4AR8 UniProt: Q899Y1

Downloads

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