ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4dobA5 - ECOD Domain | ECOD

ECOD/Domains/e4dobA5

e4dobA5

UID: 001245657

PDB

Range: A:149-335
PDB: 4DOB chain A(all domains)
UniProt: P06746 (all domains)
Gene: POLB

Molecule: DNA polymerase beta

3D Structure

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Related Domains

Browse other domains in DNA_pol_B_thumb,DNA_pol_B_palm →

Classification

AArchitecturea+b three layers(a.12)

XX-groupNucleotidyltransferase-like(316)

HH-groupNucleotidyltransferase(316.1)

TT-groupNucleotidyltransferase(316.1.1)

FFamilyDNA_pol_B_thumb,DNA_pol_B_palm(316.1.1.24)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
5'-O-[(R)-{[(R)-[(R)-chloro(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-2'-deoxyguanosineGRC
Magnesium ionMG

Pfam Families

PF14791DNA_pol_B_thumb

DNA polymerase beta thumb

PF14792DNA_pol_B_palm

DNA polymerase beta palm

ClanCL0260NTP_transf

External Links

ECOD PDB View: 4DOB RCSB PDB: 4DOB PDBe: 4DOB UniProt: P06746

Downloads

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metal

Sodium ionNA

metal

Shown in the structure viewer. Drug annotations from DrugDomain.