ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4jd5A4 - ECOD Domain | ECOD

ECOD/Domains/e4jd5A4

e4jd5A4

UID: 001247069

PDB

Range: A:342-526
PDB: 4JD5 chain A(all domains)
UniProt: P20906 (all domains)
Gene: mdlC

Molecule: Benzoylformate decarboxylase

3D Structure

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Related Domains

Browse other domains in TPP_enzyme_C →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupThiamin diphosphate-binding fold (THDP-binding)(7574)

HH-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1)

TT-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1.1)

FFamilyTPP_enzyme_C(7574.1.1.5)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
2-{3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-4-METHYL-2-OXO-2,3-DIHYDRO-1,3-THIAZOL-5-YL}ETHYL TRIHYDROGENDIPHOSPHATETZD

+ 1 additive (Glycerin)

GlycerinGOL

Pfam Families

PF02775TPP_enzyme_C

Thiamine pyrophosphate enzyme, C-terminal TPP binding domain

ClanCL0254THDP-binding

External Links

ECOD PDB View: 4JD5 RCSB PDB: 4JD5 PDBe: 4JD5 UniProt: P20906

Downloads

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DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.