ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e4jzvB2 - ECOD Domain | ECOD

ECOD/Domains/e4jzvB2

e4jzvB2

UID: 001247761

PDB

Range: B:1-157
PDB: 4JZV chain B(all domains)
UniProt: O35013 (all domains)
Gene: ytkD

Molecule: RNA PYROPHOSPHOHYDROLASE

3D Structure

Loading viewer...

Related Domains

Browse other domains in NUDIX →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupNudix(221.4)

TT-groupNudix(221.4.1)

FFamilyNUDIX(221.4.1.1)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

NUDIX domain

ClanCL0261NUDIX

External Links

ECOD PDB View: 4JZV RCSB PDB: 4JZV PDBe: 4JZV UniProt: O35013

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure