ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3qviA3 - ECOD Domain | ECOD

ECOD/Domains/e3qviA3

e3qviA3

UID: 001248873

PDB

Range: A:175-328
PDB: 3QVI chain A(all domains)
UniProt: Q9Y006 (all domains)
Gene: PMIII

Molecule: Histo-aspartic protease

3D Structure

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Related Domains

Browse other domains in Asp →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyAsp(1.1.1.1)

Ligands

in contact, ≤ 4 Å

TriglymePG5
drugDrugBank DB02078
(4R)-N-[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-3-[(2S,3S)-2-hydroxy-3-{[S-methyl-N-(phenylacetyl)-L-cysteinyl]amino}-4-phenylbutanoyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamideK95

Pfam Families

Eukaryotic aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 3QVI RCSB PDB: 3QVI PDBe: 3QVI UniProt: Q9Y006

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 2 additives (1,2-ETHANEDIOL, Tetraethylene glycol)

1,2-ETHANEDIOLEDO
Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.