ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3zknA3 - ECOD Domain | ECOD

ECOD/Domains/e3zknA3

e3zknA3

UID: 001249461

PDB

Range: A:14-196
PDB: 3ZKN chain A(all domains)
UniProt: Q9Y5Z0 (all domains)
Gene: BACE2

Molecule: BETA-SECRETASE 2

3D Structure

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Related Domains

Browse other domains in Asp →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyAsp(1.1.1.1)

Ligands

in contact, ≤ 4 Å

5-(2,2,2-Trifluoro-ethoxy)-pyridine-2-carboxylic acid [3-((S)-2-amino-1,4-dimethyl-6-oxo-1,4,5,6-tetrahydro-pyrimidin-4-yl)-phenyl]-amideWZV

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer.

Pfam Families

Eukaryotic aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 3ZKN RCSB PDB: 3ZKN PDBe: 3ZKN UniProt: Q9Y5Z0

Downloads

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Drug annotations from DrugDomain.