ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3ksmB2 - ECOD Domain | ECOD

ECOD/Domains/e3ksmB2

e3ksmB2

UID: 001252805

PDB

Range: B:40-143,B:280-314
PDB: 3KSM chain B(all domains)
UniProt: Q2S7D2 (all domains)
Gene: HCH_06819

Molecule: ABC-type sugar transport system, periplasmic component

3D Structure

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Related Domains

Browse other domains in Peripla_BP_4 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupPeriplasmic binding protein-like I(2007.1.2)

FFamilyPeripla_BP_4(2007.1.2.11)

Ligands

in contact, ≤ 4 Å

beta-D-ribofuranoseBDR

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF13407Peripla_BP_4

Periplasmic binding protein domain

ClanCL0144Periplas_BP

External Links

ECOD PDB View: 3KSM RCSB PDB: 3KSM PDBe: 3KSM UniProt: Q2S7D2

Downloads

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