ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3k9cA3 - ECOD Domain | ECOD

ECOD/Domains/e3k9cA3

e3k9cA3

UID: 001253007

PDB

Range: A:72-166,A:298-339
PDB: 3K9C chain A(all domains)
UniProt: Q0S5Y9 (all domains)
Gene: RHA1_ro05266

Molecule: Transcriptional regulator, LacI family protein

3D Structure

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Related Domains

Browse other domains in Peripla_BP_1 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupPeriplasmic binding protein-like I(2007.1.2)

FFamilyPeripla_BP_1(2007.1.2.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00532Peripla_BP_1

Periplasmic binding proteins and sugar binding domain of LacI family

ClanCL0144Periplas_BP

External Links

ECOD PDB View: 3K9C RCSB PDB: 3K9C PDBe: 3K9C UniProt: Q0S5Y9

Downloads

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