ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4khnA7 - ECOD Domain | ECOD

ECOD/Domains/e4khnA7

e4khnA7

UID: 001255952

PDB

Range: A:376-468,A:575-732
PDB: 4KHN chain A(all domains)
UniProt: Q38087 (all domains)
Gene: 43

Molecule: DNA polymerase

3D Structure

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Related Domains

Browse other domains in DNA_pol_B →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyDNA_pol_B(304.48.1.3)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Sodium ionNA
metal
2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosineXG4

Pfam Families

PF00136DNA_pol_B

DNA polymerase family B

ClanCL0194DNA_pol_B-like

External Links

ECOD PDB View: 4KHN RCSB PDB: 4KHN PDBe: 4KHN UniProt: Q38087

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.