ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1s6pA8 - ECOD Domain | ECOD

ECOD/Domains/e1s6pA8

e1s6pA8

UID: 001257007

PDB

Range: A:1-239
PDB: 1S6P chain A(all domains)
UniProt: P03366 (all domains)
Gene: gag-pol

Molecule: POL polyprotein [Contains: Reverse transcriptase]

3D Structure

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Related Domains

Browse other domains in RVT_1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyRVT_1(304.48.1.1)

Ligands

in contact, ≤ 4 Å

1-(4-Cyano-phenyl)-3-[2-(2,6-dichloro-phenyl)-1-imino-ethyl]-thioureaIET
drugDrugBank DB07961

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Reverse transcriptase (RNA-dependent DNA polymerase)

ClanCL0027RdRP

External Links

ECOD PDB View: 1S6P RCSB PDB: 1S6P PDBe: 1S6P UniProt: P03366

Downloads

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