ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3ht3D5 - ECOD Domain | ECOD

ECOD/Domains/e3ht3D5

e3ht3D5

UID: 001257080

PDB

Range: D:644-668,D:793-876
PDB: 3HT3 chain D(all domains)
UniProt: D9N168 (all domains)
Gene: DPO1

Molecule: DNA polymerase I, large fragment

3D Structure

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Related Domains

Browse other domains in DNA_pol_A →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyDNA_pol_A(304.48.1.6)

Ligands

in contact, ≤ 4 Å

2'-Deoxycytidine 5'-triphosphateDCP
drugDrugBank DB03258
Magnesium ionMG
metalwithin 5 Å only

Shown in the structure viewer.

Pfam Families

PF00476DNA_pol_A

DNA polymerase family A

External Links

ECOD PDB View: 3HT3 RCSB PDB: 3HT3 PDBe: 3HT3 UniProt: D9N168

Downloads

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Drug annotations from DrugDomain.